SymBioSys is an EST databse for various cnidarian species and
Symbiodinium strains
EST data from the porcelain crab Petrolisthes cinctipes (previously hosted here) has been moved to: PetrolESTes.
EST data from the porcelain crab Petrolisthes cinctipes (previously hosted here) has been moved to: PetrolESTes.
UPDATE (10/15/09): Release of new
assembly of Montastraea faveolata and Acropora palmata
ESTs
- Available databases
- Acropora millepora larval transcriptome - 99,091 unique
sequences
- Acropora palmata - 14,647 unique sequences
- Aiptasia pallida - 4,925 unique sequences
- Montastraea annularis - 2,388 unique sequences
- Montastraea faveolata - 11,611 unique sequences
- Porites astreoides - 6,681 unique sequences
- Symbiodinium sp. clade C3 - 2,632 unique sequences
- Symbiodinium sp. strain KB8 (clade A) - 1,220 unique
sequences
- SymBioSys was cited by:
- C.R. Voolstra, J. Schnetzer, L. Peshkin, C.J. Randall, A.M. Szmant, and M. Medina (2009). Effects of temperature on gene expression in embryos of the coral Montastraea faveolata. BMC Genomics 10:627.
- DeSalvo MK, Sunagawa S, Voolstra CR, Medina M. Transcriptomic responses to heat stress and bleaching in the Elkhorn coral Acropora palmata. Mar Ecol Prog Ser:in press
- Reyes-Bermudez, A., M.K. DeSalvo, C.R. Voolstra, S. Sunagawa,
A.M. Szmant, R. Iglesias-Prieto, M. Medina (2009).
Gene expression microarray analysis encompassing metamorphosis and the onset of calcification in the scleractinian coral Montastraea faveolata.
Marine Genomics: doi:10.1016/j.margen.2009.07.002, 2009.
- Meyer, E., G.V. Aglyamova, S. Wang, J. Buchanan-Carter, D. Abrego, J.K. Colbourne,
B.L. Willis, M.V. Matz (2009). Sequencing
and de novo analysis of a coral larval transcriptome using 454 GS-Flx.
BMC Genomics 10:219.
- Sunagawa, S., M.K. DeSalvo, C.R. Voolstra, A. Reyes-Bermudez, M. Medina (2009). Identification and Gene Expression Analysis of a
Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals.
PLoS ONE 4(3): e4865.
- Voolstra, C.R., J.A. Schwarz, J. Schnetzer, S. Sunagawa, M.K. DeSalvo, A.M. Szmant, M.A. Coffroth, M. Medina (2009).
The host transcriptome remains unaltered during the establishment of coral-algal symbioses.
Mol Ecol 18: 1823-1833, 2009.
- SymBioSys was launched as a database project based on the EST2uni software tool (Forment et al. 2008).
- Adopted and maintained by: Shini Sunagawa - Medina Lab